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ArMone: A Software Suite Specially Designed for Processing and Analysis of Phosphoproteome Data
Jiang, Xinning1,2; Ye, Mingliang1; Cheng, Kai1,2; Zou, Hanfa1; Zou HF(邹汉法)
关键词Phosphoproteome Analysis Automatic Validation Bioinformatics Software
刊名JOURNAL OF PROTEOME RESEARCH
2010-05-01
ISSN1535-3893
DOI10.1021/pr9009904
9期:5页:2743-2751
收录类别SCI
文章类型Article
部门归属18
项目归属1809
产权排名1;1
WOS标题词Science & Technology ; Life Sciences & Biomedicine
类目[WOS]Biochemical Research Methods
研究领域[WOS]Biochemistry & Molecular Biology
关键词[WOS]TANDEM MASS-SPECTRA ; PHOSPHORYLATION ANALYSIS ; PROTEIN-PHOSPHORYLATION ; PEPTIDE IDENTIFICATION ; SPECTROMETRY ; PROTEOMICS ; PHOSPHOPEPTIDES ; CHROMATOGRAPHY ; ENRICHMENT
英文摘要The development of new phosphoproteomic technologies has led to a rapid increase in the number of phosphoprotein identifications. Managing and extracting valuable information from the phosphoproteome data sets and generating output information in user-friendly formats require special data management and process platform. Even though a few proteome pipelines have been developed, they are mainly designed for processing data set of unmodified peptide/protein identifications. Because of the different characteristics of phosphorylated peptides/proteins, these pipelines are inconvenient, sometimes inappropriate, to process the phosphoproteome data sets. In this study, a software suite named ArMone was specially designed for the management and analysis of phosphoproteome data. It can readily identify phosphopeptides with high reliability and high sensitivity, and can effectively pinpoint the most probable phosphorylation site. A few well-designed postvalidation process tools are also available to extract and export valuable information. ArMone is a stand-alone application with friendly graphic user interface. It can run on different operating systems and can process data sets obtained by most of the commonly used database search engines.
语种英语
原文出处查看原文
WOS记录号WOS:000277353200063
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被引频次:21[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://cas-ir.dicp.ac.cn/handle/321008/103091
专题中国科学院大连化学物理研究所
通讯作者Zou HF(邹汉法)
作者单位1.Chinese Acad Sci, Dalian Inst Chem Phys, Natl Chromatog R&A Ctr, CAS Key Lab Separat Sci Analyt Chem, Dalian 116023, Peoples R China
2.Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
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Jiang, Xinning,Ye, Mingliang,Cheng, Kai,et al. ArMone: A Software Suite Specially Designed for Processing and Analysis of Phosphoproteome Data[J]. JOURNAL OF PROTEOME RESEARCH,2010,9(5):2743-2751.
APA Jiang, Xinning,Ye, Mingliang,Cheng, Kai,Zou, Hanfa,&邹汉法.(2010).ArMone: A Software Suite Specially Designed for Processing and Analysis of Phosphoproteome Data.JOURNAL OF PROTEOME RESEARCH,9(5),2743-2751.
MLA Jiang, Xinning,et al."ArMone: A Software Suite Specially Designed for Processing and Analysis of Phosphoproteome Data".JOURNAL OF PROTEOME RESEARCH 9.5(2010):2743-2751.
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