DICP OpenIR
Structure determinants of indolin-2-on-3-spirothiazolidinones as MptpB inhibitors: An in silico study
Yang, Yinfeng1; Wang, Jinghui1; Li, Yan1; Xiao, Wei2; Wang, Zhenzhong2; Zhang, Jingxiao1; Gao, Weimin1; Zhang, Shuwei1; Yang, Ling3
刊名SOFT MATTER
2013
DOI10.1039/c3sm51995c
9期:46页:11054-11077
收录类别SCI
文章类型Article
WOS标题词Science & Technology ; Physical Sciences ; Technology
类目[WOS]Chemistry, Physical ; Materials Science, Multidisciplinary ; Physics, Multidisciplinary ; Polymer Science
研究领域[WOS]Chemistry ; Materials Science ; Physics ; Polymer Science
关键词[WOS]PROTEIN-TYROSINE-PHOSPHATASE ; COMPUTATIONAL DRUG DESIGN ; MYCOBACTERIUM-TUBERCULOSIS ; MOLECULAR-DYNAMICS ; SELECTIVE INHIBITORS ; GENETIC ALGORITHM ; WATER-MOLECULES ; HIGHLY POTENT ; IDENTIFICATION ; DERIVATIVES
英文摘要Tuberculosis caused by Mycobacterium tuberculosis (Mtb), is a major factor of death around the world. Mtb protein tyrosine phosphatase B (MptpB), a virulent phosphatase encoded by Mtb, is a potential target for the treatment of tuberculosis. To explore the structure features of 134 indolin-2-on-3-spirothiazolidinones as MptpB inhibitors, in this work, a set of ligand-and receptor-based 3D-QSAR studies were, for the first time, carried out using comparative molecular field analysis (CoMFA) and comparative molecular similarity index analysis (CoMSIA) techniques. Splitting of the training and test sets was constructed by Kohonen's self-organizing map algorithm. Additionally, to profile the possible binding modes of these inhibitors, molecule docking and molecular dynamics (MD) simulations were performed as well. The optimal QSAR models built on both ligand-and receptor-based alignments exhibit proper reliabilities and predictive abilities as illustrated by their statistical results that for ligand-based alignment CoMFA and CoMSIA models obtain Q(2) = 0.662, R-ncv(2) = 0.799, R-pre(2) = 0.757, and Q(2) = 0.736, R-ncv(2) = 0.847, R-pre(2) = 0.866; whereas for docking-based one achieve Q(2) = 0.536, R-ncv(2) = 0.894, R-pre(2) = 0.823, and Q(2) = 0.498, R-ncv(2) = 0.812, R-pre(2) = 0.833, respectively. Furthermore, the contours generated from these models are well consistent with the docking and MD results we performed. Our findings are: (1) Indolin-2-on-3-spirothiazolidinones may bind to the MptpB with a "cockhorse" conformation, which is stabilized by eight H-bonds formed with the surrounding residues (Arg166, Cys160, Ala162, Lys164, His94 and Glu129), one cation-pi interaction with the side chain of Arg166 and two hydrophobic interactions in the binding site. (2) Introduction of bulky and electropositive substituents at R-3, hydrophobic substituents around rings A and E can improve the inhibition potency. (3) Nitro group at R-2 position of 2-oxindole core plays a crucial role for the biological activities, and may also be essential to the water-mediated H-bond networks. (4) For 8, 10-positions of the thiazolidinone ring and 13-position of isoxazole, the groups acting as H-bond acceptor are favorable for increasing the activity. All these results are expected to be useful in the discovery of novel and more potent MptpB inhibitors.
语种英语
WOS记录号WOS:000326747700014
引用统计
被引频次:5[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://cas-ir.dicp.ac.cn/handle/321008/137779
专题中国科学院大连化学物理研究所
作者单位1.Dalian Univ Technol, Key Lab Ind Ecol & Environm Engn MOE, Dalian 116024, Liaoning, Peoples R China
2.Jiangsu Kanion Parmaceut CO LTD, State Key Lab New Tech Chinese Med Pharmaceut Pro, Lianyungang 222001, Jiangsu, Peoples R China
3.Chinese Acad Sci, Dalian Inst Chem Phys, Lab Pharmaceut Resource Discovery, Dalian 116023, Liaoning, Peoples R China
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GB/T 7714
Yang, Yinfeng,Wang, Jinghui,Li, Yan,et al. Structure determinants of indolin-2-on-3-spirothiazolidinones as MptpB inhibitors: An in silico study[J]. SOFT MATTER,2013,9(46):11054-11077.
APA Yang, Yinfeng.,Wang, Jinghui.,Li, Yan.,Xiao, Wei.,Wang, Zhenzhong.,...&Yang, Ling.(2013).Structure determinants of indolin-2-on-3-spirothiazolidinones as MptpB inhibitors: An in silico study.SOFT MATTER,9(46),11054-11077.
MLA Yang, Yinfeng,et al."Structure determinants of indolin-2-on-3-spirothiazolidinones as MptpB inhibitors: An in silico study".SOFT MATTER 9.46(2013):11054-11077.
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