DICP OpenIR
Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere
Gao, Rui1; Hao, Da Cheng1; Hu, Wenli1; Song, Song1; Li, Shi Yang2; Ge, Guang Bo2,3
Corresponding AuthorHao, Da Cheng(hao@djtu.edu.cn)
KeywordBiodegradation polycyclic aromatic hydrocarbon Talaromyces verruculosus Taxus mairei transcriptome sequencing
Source PublicationCURRENT SCIENCE
2019-04-10
ISSN0011-3891
DOI10.18520/cs/v116/i7/1218-1228
Volume116Issue:7Pages:1218-1228
Funding ProjectConselho Nacional de DesenvolvimentoCientifico e Tecnologico Project[477668/2012-7] ; Mackenzie Presbyterian University, Sao Paulo, Brazil
Funding OrganizationConselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil
WOS SubjectMultidisciplinary Sciences
WOS Research AreaScience & Technology - Other Topics
WOS KeywordBIODEGRADATION ; DEGRADATION ; PHENANTHRENE ; COMMUNITY ; IDENTIFICATION ; PATHWAY ; PYRENE ; PAHS
AbstractThe present study aims to examine polycyclic aromatic hydrocarbon (PAH)-degrading fungal strains isolated from rhizosphere soil of Taxus mairei. Talaromyces verruculosus strain DJTU-SJ5 showed the higher PAH degradation than other strains. Improved degradation of five PAHs was attained using the two-member consortium. The industrial potential of DJTU-SJ5 has been highlighted. The transcriptome profiles of DJTU-SJ5 before and after PAH challenge were decoded by high-throughput RNA sequencing. A total of 33,084 unigenes were obtained by de novo assembly of 19.9 Gb clean sequencing reads; 10,532, 1,104 and 11,779 unigenes were expressed distinctly between control and phenanthrene (phen)-treated samples; control and pyrene (pyre)-treated samples, and phen and pyre respectively. These included numerous PAH degradation, defence and stress-related genes. The degradation pathway of PAHs in strain DJTU-SJ5 is proposed based on the metabolites and transcriptome analyses.
Language英语
Funding OrganizationConselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil
WOS IDWOS:000463900200033
PublisherINDIAN ACAD SCIENCES
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://cas-ir.dicp.ac.cn/handle/321008/165661
Collection中国科学院大连化学物理研究所
Corresponding AuthorHao, Da Cheng
Affiliation1.Dalian Jiaotong Univ, Sch Environm & Chem Engn, Dalian 116028, Peoples R China
2.Chinese Acad Sci, Dalian Inst Chem Phys, Lab Pharmaceut Resource Discovery, Dalian 116023, Peoples R China
3.Shanghai Univ Tradit Chinese Med, Inst Interdisciplinary Med, Shanghai 201203, Peoples R China
Recommended Citation
GB/T 7714
Gao, Rui,Hao, Da Cheng,Hu, Wenli,et al. Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere[J]. CURRENT SCIENCE,2019,116(7):1218-1228.
APA Gao, Rui,Hao, Da Cheng,Hu, Wenli,Song, Song,Li, Shi Yang,&Ge, Guang Bo.(2019).Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere.CURRENT SCIENCE,116(7),1218-1228.
MLA Gao, Rui,et al."Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere".CURRENT SCIENCE 116.7(2019):1218-1228.
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